Bioequivalence and Bioavailability Forum

Which packages, working directory? [Software]

posted by Helmut  – Vienna, Austria, 2021-04-16 12:50 (1271 d 20:59 ago) – Posting: # 22310
Views: 9,126

Hi Jayant,

❝ […] not working …

… is not a proper description of a software-related problem. I don’t have a crystal ball. Operating system, release of , installed packages and their versions, working directory?

Install devtools from CRAN and run this script:

getwd()
options(width = 60)
devtools::session_info()

You need five packages to run bootf2BCA: boot, ggplot2, plotly, rlang, and shiny. Their current versions are: boot 1.3-27, ggplot2 3.3.3, plotly 4.9.3, rlang 0.4.10, shiny 1.6.0. If one or more are missing our outdated, see this article about installation/updating of packages.
Alternatively you can execute this script:

update.packages(checkBuilt = TRUE, ask = FALSE)
install.packages(c("boot", "ggplot2", "plotly", "rlang", "shiny"),
                 repos = "https://cloud.r-project.org")

If after the first command a window with the question

 ^{Do you want to install from sources the packages which need
 compilation?}

pops up, click on     No     (the central button – it’s actual label depends on the locale of your operating system).

Your working directory (as reported by getwd()) has to be the one where the scripts of bootf2BCA are (the data files can be somewhere else). If not, in the menu bar of the  console:

File → Change dir… {navigate to the desired folder} and confirm with   OK  

—
Dif-tor heh smusma 🖖🏼 Довге життя Україна! 
Helmut Schütz


The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes

Complete thread:

• Validation of PhEq_bootstrap Helmut 2018-07-12 17:47 [Software] 
  • Validation of PhEq_bootstrap ElMaestro 2018-07-12 22:21
    • Validation of PhEq_bootstrap Helmut 2018-07-13 01:29
      • Validation of PhEq_bootstrap ElMaestro 2018-07-13 10:14
        • Validation of PhEq_bootstrap Helmut 2018-07-13 12:54
          • Validation of PhEq_bootstrap ElMaestro 2018-07-13 14:28
  • Validation of PhEq_bootstrap Shuanghe 2018-07-17 15:54
  • PhEq_bootstrap in R d_labes 2018-08-15 09:45
    • bootf2BCA v1.1 Helmut 2019-10-05 00:59
      • bootf2BCA v1.2: seed Helmut 2020-09-25 19:37
        • bootf2BCA v1.2: seed PTM139 2021-04-16 07:53
          • Which packages, working directory?Helmut 2021-04-16 10:50
            • Which packages, working directory? PTM139 2021-04-27 13:02
        • bootf2BCA v1.2: seed Rayhope 2022-03-28 14:35
          • bootf2BCA v1.3 Helmut 2022-03-28 14:48
            • bootf2BCA v1.3 Rayhope 2022-03-30 06:34
      • bootf2BCA v1.1 Flam 2023-06-21 03:41
        • bootf2BCA v1.3.1 (current since 2022-06-25) Helmut 2023-06-23 13:47
          • bootf2BCA v1.3.1 (current since 2022-06-25) Flam 2023-06-26 23:16
            • Install required packages first Helmut 2023-06-27 11:47
  • Validation of PhEq_bootstrap Rayhope 2021-07-29 08:49
    • Validation of PhEq_bootstrap Helmut 2021-08-02 18:12