## Some tests... [R for BE/BA]

Hi ElMaestro,

» now it gets really interesting.

I made some tests. And results is surprising.

First code:

b1 1.109ms VS b2 3.751ms , so R solve block-diagonal matrix more than twice faster.

In Julia b3 2.707 ms: random matrix solving in Julia faster than in R, but more slower then b1 when matrix is block-diagonal.

Second code:

Solving by blocks in R (b5 3.275 ms) really slower (a little more faster than solving random matrix).

But solving block-diagonal matrix in Julia when structure is described takes 56.484 μs (b3 in second code), this is 20 times faster than in R.

I'm trying to discuss this in Julia forum here.

I'am not so expirienced in R, but I think that

» now it gets really interesting.

I made some tests. And results is surprising.

First code:

```
using BlockDiagonals
```

using LinearAlgebra

using BenchmarkTools

Am = rand(150, 150)

Bm = rand(150, 150)

@rput Am

@rput Bm

blocks = [rand(3,3) for i in 1:50]

BDm = BlockDiagonal(blocks)

V = Matrix(BDm)

@rput V

b1 = @benchmark R"solve(V)"

b2 = @benchmark R"solve(Bm)"

b3 = @benchmark inv(Bm)

b1 1.109ms VS b2 3.751ms , so R solve block-diagonal matrix more than twice faster.

In Julia b3 2.707 ms: random matrix solving in Julia faster than in R, but more slower then b1 when matrix is block-diagonal.

Second code:

`using RCall`

using BlockDiagonals

using LinearAlgebra

using BenchmarkTools

blocks = [rand(3,3) for i in 1:50]

BDm = BlockDiagonal(blocks)

V = Matrix(BDm)

@rput V

@rput blocks

b1 = @benchmark inv(V)

b2 = @benchmark inv.(blocks)

b3 = @benchmark inv(BDm)

b4 = @benchmark R"solve(V)"

b5 = @benchmark R"for (i in 1:50) {solve(blocks[[i]])}"

Solving by blocks in R (b5 3.275 ms) really slower (a little more faster than solving random matrix).

But solving block-diagonal matrix in Julia when structure is described takes 56.484 μs (b3 in second code), this is 20 times faster than in R.

I'm trying to discuss this in Julia forum here.

I'am not so expirienced in R, but I think that

`Solve.block`

can increase performance for block-diagonal matrices, docs here.### Complete thread:

- Semireplicated + REML in R ElMaestro 2020-07-10 13:19 [R for BE/BA]
- Semireplicated + REML in R Helmut 2020-07-10 19:03
- Semireplicated + REML in R ElMaestro 2020-07-10 19:24
- Avoid partial replicate designs, pleeeze! Helmut 2020-07-11 11:57
- Avoid partial replicate designs, pleeeze! ElMaestro 2020-07-11 14:43
- Braveheart! Helmut 2020-07-11 15:38
- Who can help? ElMaestro 2020-07-12 12:28
- Who can help? ElMaestro 2020-07-12 13:26
- Update II ElMaestro 2020-07-12 21:36
- Update III ElMaestro 2020-07-12 21:46

- Final update today ElMaestro 2020-07-12 22:27
- Medium rare. Helmut 2020-07-13 13:52
- took just 52 hrs to do it :-) ElMaestro 2020-07-13 14:18
- Will take much more hours still… Helmut 2020-07-13 15:34

- Negative determinant ElMaestro 2020-07-14 03:22
- Are we loosers? Helmut 2020-07-14 13:58
- "we"? Loosers? ElMaestro 2020-07-14 15:07
- Misunderstanding? Helmut 2020-07-14 15:32

- "we"? Loosers? ElMaestro 2020-07-14 15:07

- Are we loosers? Helmut 2020-07-14 13:58

- took just 52 hrs to do it :-) ElMaestro 2020-07-13 14:18

- Medium rare. Helmut 2020-07-13 13:52

- Braveheart! ElMaestro 2020-07-13 10:13
- Braveheart! Helmut 2020-07-13 14:16
- Braveheart! PharmCat 2020-07-15 14:19
- Braveheart! ElMaestro 2020-08-02 17:39

- Who can help? ElMaestro 2020-07-12 12:28

- Braveheart! Helmut 2020-07-11 15:38

- Avoid partial replicate designs, pleeeze! ElMaestro 2020-07-11 14:43

- Avoid partial replicate designs, pleeeze! Helmut 2020-07-11 11:57

- Semireplicated + REML in R ElMaestro 2020-07-10 19:24
- We were all blind (except Detlew) Helmut 2020-07-15 14:27
- It is the opposite way around for me ElMaestro 2020-07-15 16:25
- Desultory thoughts Helmut 2020-07-15 17:33
- FDA RSABE is ISC d_labes 2020-07-15 18:13
- FDA RSABE is ISC Helmut 2020-07-16 11:11

- Desultory thoughts ElMaestro 2020-07-15 23:06
- Desultory thoughts Helmut 2020-07-16 10:59

- FDA RSABE is ISC d_labes 2020-07-15 18:13

- Desultory thoughts Helmut 2020-07-15 17:33
- Phoenix - which template? mittyri 2020-07-19 00:42
- FDA RSABE Project template_ v1.4.phxproj Helmut 2020-07-19 01:45

- It is the opposite way around for me ElMaestro 2020-07-15 16:25
- "By popular demand": likelihood ElMaestro 2020-07-24 10:07
- And by the way.... ElMaestro 2020-07-24 12:52
- And by the way.... PharmCat 2020-08-03 14:24
- Not understood ElMaestro 2020-08-03 22:55
- Not understood PharmCat 2020-08-05 01:41
- Not understood ElMaestro 2020-08-05 08:13
- Not understood PharmCat 2020-08-05 16:37
- Open issues ElMaestro 2020-08-06 21:11
- Open issues PharmCat 2020-08-07 00:02
- Open issues ElMaestro 2020-08-07 07:49
- Open issues PharmCat 2020-08-07 11:29
- Still can't make it work ElMaestro 2020-08-07 13:08
- Still can't make it work PharmCat 2020-08-07 15:42
- Still can't make it work ElMaestro 2020-08-07 16:44
- Still can't make it work PharmCat 2020-08-07 18:14
- Still can't make it work ElMaestro 2020-08-07 18:23
- And now it works ElMaestro 2020-08-07 21:31
- Still can't make it work PharmCat 2020-08-08 01:08
- Speed improvement ElMaestro 2020-08-08 12:25
- Speed improvement PharmCat 2020-08-08 17:27
- Speed improvement ElMaestro 2020-08-08 18:10
- Speed improvement PharmCat 2020-08-09 18:22
- Some tests...PharmCat 2020-08-10 11:48

- Speed improvement ElMaestro 2020-08-08 12:25

- Still can't make it work ElMaestro 2020-08-07 18:23

- Still can't make it work PharmCat 2020-08-07 18:14

- Still can't make it work ElMaestro 2020-08-07 16:44

- Still can't make it work PharmCat 2020-08-07 15:42

- Still can't make it work ElMaestro 2020-08-07 13:08

- Open issues PharmCat 2020-08-07 11:29

- Open issues ElMaestro 2020-08-07 07:49

- Open issues PharmCat 2020-08-07 00:02

- Open issues ElMaestro 2020-08-06 21:11

- Not understood PharmCat 2020-08-05 16:37

- Not understood ElMaestro 2020-08-05 08:13

- Not understood PharmCat 2020-08-05 01:41

- Not understood ElMaestro 2020-08-03 22:55

- And by the way.... PharmCat 2020-08-03 14:24

- And by the way.... ElMaestro 2020-07-24 12:52

- Semireplicated + REML in R Helmut 2020-07-10 19:03