Are we loosers? [🇷 for BE/BA]
❝ The problem is not that X changes dimensions, X is the design matrix and this is generally never a square matrix, just full column rank with as many rows as observations. X does not change at all during the optimisation.
Ah, yes!
❝ The issue here is that the determinant suddenly becomes apparently negative.
Might point towards a similar issue in PHX complaining about negative variance components and SAS forcing them to zero.
❝ This is mysterious to me at this point, I am not much into matrices.
So am I. Sorry.
❝ I take it as a case of NM taking some unfortunate decision, which is then corrected afterwards.
Luckily.
❝ However this does give food for thought: if the parameter vector that gives a negative determinant is chosen as a starting value then NM will stop immediately and throw an error - you can try it with the vector above.
❝ Therefore, it may be desirable to ascertain positiveness of that determinant (and the others?) when starting the algo, and to slightly modify individual starter values in case of such suboptimally chosen starter values until Obj.F12 actually returns something meaningful.
But how?
❝ I believe the issue can not be remedied by fiddling with X.
Agree.
❝ Update 8 hours later: …
Sounds reasonable.
But I think that we are going in circles. This story is all about RSABE where we have to go for ABE if swR <0.294 (or the mixed-model for ABE in general). The scaling part is easily doable in R. Since you found a solution for estimating swR and the p
PROC MIXED
CLASSES SEQ SUBJ PER TRT;
MODEL Y = SEQ PER TRT/ DDFM=SATTERTH;
RANDOM TRT/TYPE=FA0(2) SUB=SUBJ G;
REPEATED/GRP=TRT SUB=SUBJ;
ESTIMATE 'T vs. R' TRT 1 -1/CL ALPHA=0.1;
run;
For the imbalanced dataset of this post PHX gives me:
Δ 0.03084859
SEΔ 0.03256626
df 18.24154
and therefore, \(\small{CI=\exp (\Delta\mp t_{0.05,df}\times SE)=\left \{ 0.9747, 1.0912 \right \}}\).
Dif-tor heh smusma 🖖🏼 Довге життя Україна!
Helmut Schütz
The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes
Complete thread:
- Semireplicated + REML in R ElMaestro 2020-07-10 13:19 [🇷 for BE/BA]
- Semireplicated + REML in R Helmut 2020-07-10 19:03
- Semireplicated + REML in R ElMaestro 2020-07-10 19:24
- Avoid partial replicate designs, pleeeze! Helmut 2020-07-11 11:57
- Avoid partial replicate designs, pleeeze! ElMaestro 2020-07-11 14:43
- Braveheart! Helmut 2020-07-11 15:38
- Who can help? ElMaestro 2020-07-12 12:28
- Who can help? ElMaestro 2020-07-12 13:26
- Update II ElMaestro 2020-07-12 21:36
- Update III ElMaestro 2020-07-12 21:46
- Final update today ElMaestro 2020-07-12 22:27
- Medium rare. Helmut 2020-07-13 13:52
- took just 52 hrs to do it :-) ElMaestro 2020-07-13 14:18
- Will take much more hours still… Helmut 2020-07-13 15:34
- Negative determinant ElMaestro 2020-07-14 03:22
- Are we loosers?Helmut 2020-07-14 13:58
- "we"? Loosers? ElMaestro 2020-07-14 15:07
- Misunderstanding? Helmut 2020-07-14 15:32
- "we"? Loosers? ElMaestro 2020-07-14 15:07
- Are we loosers?Helmut 2020-07-14 13:58
- took just 52 hrs to do it :-) ElMaestro 2020-07-13 14:18
- Medium rare. Helmut 2020-07-13 13:52
- Braveheart! ElMaestro 2020-07-13 10:13
- Braveheart! Helmut 2020-07-13 14:16
- Braveheart! PharmCat 2020-07-15 14:19
- Braveheart! ElMaestro 2020-08-02 17:39
- Who can help? ElMaestro 2020-07-12 12:28
- Braveheart! Helmut 2020-07-11 15:38
- Avoid partial replicate designs, pleeeze! ElMaestro 2020-07-11 14:43
- Avoid partial replicate designs, pleeeze! Helmut 2020-07-11 11:57
- Semireplicated + REML in R ElMaestro 2020-07-10 19:24
- We were all blind (except Detlew) Helmut 2020-07-15 14:27
- It is the opposite way around for me ElMaestro 2020-07-15 16:25
- Desultory thoughts Helmut 2020-07-15 17:33
- FDA RSABE is ISC d_labes 2020-07-15 18:13
- FDA RSABE is ISC Helmut 2020-07-16 11:11
- Desultory thoughts ElMaestro 2020-07-15 23:06
- Desultory thoughts Helmut 2020-07-16 10:59
- FDA RSABE is ISC d_labes 2020-07-15 18:13
- Desultory thoughts Helmut 2020-07-15 17:33
- Phoenix - which template? mittyri 2020-07-19 00:42
- FDA RSABE Project template_ v1.4.phxproj Helmut 2020-07-19 01:45
- It is the opposite way around for me ElMaestro 2020-07-15 16:25
- "By popular demand": likelihood ElMaestro 2020-07-24 10:07
- And by the way.... ElMaestro 2020-07-24 12:52
- And by the way.... PharmCat 2020-08-03 14:24
- Not understood ElMaestro 2020-08-03 22:55
- Not understood PharmCat 2020-08-05 01:41
- Not understood ElMaestro 2020-08-05 08:13
- Not understood PharmCat 2020-08-05 16:37
- Open issues ElMaestro 2020-08-06 21:11
- Open issues PharmCat 2020-08-07 00:02
- Open issues ElMaestro 2020-08-07 07:49
- Open issues PharmCat 2020-08-07 11:29
- Still can't make it work ElMaestro 2020-08-07 13:08
- Still can't make it work PharmCat 2020-08-07 15:42
- Still can't make it work ElMaestro 2020-08-07 16:44
- Still can't make it work PharmCat 2020-08-07 18:14
- Still can't make it work ElMaestro 2020-08-07 18:23
- And now it works ElMaestro 2020-08-07 21:31
- Still can't make it work PharmCat 2020-08-08 01:08
- Speed improvement ElMaestro 2020-08-08 12:25
- Speed improvement PharmCat 2020-08-08 17:27
- Speed improvement ElMaestro 2020-08-08 18:10
- Speed improvement PharmCat 2020-08-09 18:22
- Some tests... PharmCat 2020-08-10 11:48
- Speed improvement ElMaestro 2020-08-08 12:25
- Still can't make it work ElMaestro 2020-08-07 18:23
- Still can't make it work PharmCat 2020-08-07 18:14
- Still can't make it work ElMaestro 2020-08-07 16:44
- Still can't make it work PharmCat 2020-08-07 15:42
- Still can't make it work ElMaestro 2020-08-07 13:08
- Open issues PharmCat 2020-08-07 11:29
- Open issues ElMaestro 2020-08-07 07:49
- Open issues PharmCat 2020-08-07 00:02
- Open issues ElMaestro 2020-08-06 21:11
- Not understood PharmCat 2020-08-05 16:37
- Not understood ElMaestro 2020-08-05 08:13
- Not understood PharmCat 2020-08-05 01:41
- Not understood ElMaestro 2020-08-03 22:55
- And by the way.... PharmCat 2020-08-03 14:24
- And by the way.... ElMaestro 2020-07-24 12:52
- Semireplicated + REML in R Helmut 2020-07-10 19:03