Bioequivalence and Bioavailability Forum • tricks of R v4.0.0

tricks of R v4.0.0 [🇷 for BE/BA]

posted by yjlee168 – Kaohsiung, Taiwan, 2020-04-29 18:13 (1629 d 15:07 ago) – Posting: # 21363
Views: 21,577
(edited on 2020-04-29 21:13)

Dear Mahmound,

Right. R v4.0.0 requires all packages rebuild for it. The binary file (*.tgz) on SourceForge now was built under previous version (R v3.6.x). So you need to download the source tarball file (*.tar.gz) of bear from here and place it in your working folder (getwd() to know where it is). Then open an terminal, type R CMD INSTALL bear_2.8.7.tar.gz [Enter]. It should work. I have done with upgrade to R v4.0.0 on Windows and macOS (both Mojave & Catalina). Now is waiting for linux-ubuntu (from its software update).

Ps. (1) However packages binary built under R v4.0.0 can be installed for R v3.6.x without any compatibility issue. (2) R v4.0.0 seems running faster on Windows, but much slower on Catalina... just my gut feeling.

❝ library(bear)

❝ Error: package or namespace load failed for ‘bear’:

❝ package ‘bear’ was installed before R 4.0.0: please re-install it

—
All the best,
-- Yung-jin Lee
bear v2.9.1:- created by Hsin-ya Lee & Yung-jin Lee
Kaohsiung, Taiwan https://www.pkpd168.com/bear
Download link (updated) -> here

Complete thread:

updates of installation bear with macOS (Mojave) yjlee168 2019-07-08 10:15 [🇷 for BE/BA]
- upgrade R with macOS (Mojave) yjlee168 2019-07-08 10:40
  - an old itch when running RGtk2 (GUI) with macOS yjlee168 2019-07-08 11:14
- upgrade/re-install cairoDevice package from source (macOS) yjlee168 2019-08-11 20:29
- updates of installation bear with macOS (Mojave) mahmoud-teaima 2020-04-09 13:01
  - bear with Catalina OS yjlee168 2020-04-09 15:46
  - Installing R v4.0.0 & bear on Catalina (macOS 10.15.3) yjlee168 2020-04-29 10:19
    - updates of installing bear/R v4.0.0 with macOS (Catalina) mahmoud-teaima 2020-04-29 15:09
      - tricks of R v4.0.0yjlee168 2020-04-29 16:13
        
        tricks of R v4.0.0 mahmoud-teaima 2020-04-29 23:00
        
        tricks of R v4.0.0 yjlee168 2020-04-30 01:19
        
        tricks of R v4.0.0 mahmoud-teaima 2020-05-01 01:38
        
        errors of bear in R v4.0.0 yjlee168 2020-05-01 23:42
        errors of bear in R v4.0.0 yjlee168 2020-05-05 01:53
        
        speed? Helmut 2020-04-30 12:38
        
        OT: What a relief :-) ElMaestro 2020-04-30 13:04
        
        OT: What a relief :-) Helmut 2020-04-30 15:21
        
        speed? yjlee168 2020-04-30 15:53
        
        speed? Helmut 2020-04-30 17:30
        
        speed? yjlee168 2020-04-30 18:40
        
        speed? Helmut 2020-04-30 23:40
        
        Xeon CPU yjlee168 2020-05-02 00:02
        
        Xeon (workstation, server) ↔ Core iX (desktop) Helmut 2020-05-02 01:22
- updates of installation bear with macOS (Mojave) jabriges 2020-05-10 04:42
  - errors of installation bear with Catalina yjlee168 2020-05-10 22:30
    - errors of installation bear with Catalina jabriges 2020-05-10 23:42
      - errors of installation bear with Catalina yjlee168 2020-05-11 00:40
        
        errors of installation bear with Catalina jabriges 2020-05-11 05:05
        
        bear v2.8.8 pre-release built under R v4.0.0 for macOS yjlee168 2020-05-11 11:15
        
        still having problems w/ bear v2.8.8 for R v4.0.0 for macOS jabriges 2020-05-11 18:06
        
        still having problems w/ bear v2.8.8 for R v4.0.0 for macOS yjlee168 2020-05-11 20:23
        
        still having problems w/ bear v2.8.8 for R v4.0.0 for macOS jabriges 2020-05-11 21:00
        
        still having problems w/ bear v2.8.8 for R v4.0.0 for macOS yjlee168 2020-05-11 21:21
        
        utils::install.packages() Helmut 2020-05-12 14:10
        
        depend = NA means ... yjlee168 2020-05-12 19:53
        
        install.package() for the source packages mittyri 2020-07-18 23:17
        
        install.package() for the source packages yjlee168 2020-07-20 00:53
        
        desription Suggests section mittyri 2020-07-20 13:27
        
        errors of installation bear on Windows Andrew S 2020-05-17 08:09
        
        errors of installation bear (R v4.0.0) on Windows yjlee168 2020-05-17 20:43
        
        errors of installation bear (R v4.0.0) on Windows Andrew S 2020-05-18 04:20
        errors of installation bear (R v4.0.0) on Windows elba.romero 2020-07-17 07:12
        
        errors of installation bear (R v4.0.0) on Windows Helmut 2020-07-17 10:46
        
        errors of installation bear (R v4.0.0) on Windows elba.romero 2020-07-18 17:43
        
        errors of installation bear (R v4.0.0) on Windows yjlee168 2020-07-20 01:00
        
        errors of installation bear (R v4.0.0) on Windows elba.romero 2020-07-28 03:18
        
        Accidentally perfect? yjlee168 2020-07-28 11:44
        
        Accidentally perfect? elba.romero 2020-07-28 18:58