confint and adjust in R [General Sta­tis­tics]

posted by ElMaestro  – Denmark, 2019-01-07 22:22  – Posting: # 19757
Views: 461

Dear d_labes,

» adjust="eat.my.shorts" is outstanding because this "method" isn't implemented but transferred via "..." and thus doesn't underlay any error checks. To react on this undesirable feature the programmer decided to set adjust= in such cases to adjust="bonferroni". Reasonable. Or?
» This behavior is described in the man page of lsmeans/pairs or summary.emmGrid.

Thanks for the explanation; I had no idea R worked this way.
And you are exactly right the options are listed in the emmeans documentation (added value for me: it seems I must kiss the lsmeans package goodbye and install emmeans in stead).

Whether or not "eat.my.shorts" should result in "bonferroni" or the default "tukey" or something else is probably a matter of personal taste. I don't think I have a qualified opinion on that aspect and it is not a crucial matter at all for me and probably for anyone on the planet. :-D

I am just very delighted I got an answer to exactly the questions that baffled me. Thanks for the help.:-):-):ok::ok: Muchas gracias.

if (3) 4

x=c("Foo", "Bar")
b=data.frame(x)
typeof(b[,1]) ##aha, integer?
b[,1]+1 ##then let me add 1



Best regards,
ElMaestro

"(...) targeted cancer therapies will benefit fewer than 2 percent of the cancer patients they’re aimed at. That reality is often lost on consumers, who are being fed a steady diet of winning anecdotes about miracle cures." New York Times (ed.), June 9, 2018.

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