Pattern? [Bioanalytics]
Hi Ken,
Sometimes concentrations in a few subjects are higher than anticipated, but this should occur at random. Why in the last six subjects? What makes them so special? If I would be an inspector that would ring my alarm bell. I would ask R how likely the observed pattern could occur by pure chance (the code takes a good while to complete; be patient – 28 minutes on my machine):
IMHO p = 4.49·10–6 should trigger an internal investigation. Some ideas/questions:
❝ In a BE study involving 26 subjects […] the last 6 subjects had many points above ULOQ.
Sometimes concentrations in a few subjects are higher than anticipated, but this should occur at random. Why in the last six subjects? What makes them so special? If I would be an inspector that would ring my alarm bell. I would ask R how likely the observed pattern could occur by pure chance (the code takes a good while to complete; be patient – 28 minutes on my machine):
set.seed(123456)
n <- 1e8 # no. of simulations; at least 1 mio needed
x <- c(rep(0, 20), rep(1, 6)) # 20 "normal" subjects and 6 ">ULOQ"
obs <- 0 # counter for the "last 6" pattern
for(j in 1:n) { if(sum(tail(sample(x), 6)) == 6) obs <- obs + 1 }
cat("p =", signif(obs/n, 4), "\n")
IMHO p = 4.49·10–6 should trigger an internal investigation. Some ideas/questions:
- Was the clinical part of the study performed in groups? If yes, which was the size of groups?
- Any documented events in the analytical batches (calibration, IS addition, detector response, etc.)?
- Look at the subjects’ pre-/post-study lab exams. High lipid parameters in these subjects (matrix effects in LC/MS-MS if no stable isotope IS was used)?
- Were the last six subjects underweight females and the others Sumo-wrestlers?
—
Dif-tor heh smusma 🖖🏼 Довге життя Україна!![[image]](https://static.bebac.at/pics/Blue_and_yellow_ribbon_UA.png)
Helmut Schütz
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The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes
Dif-tor heh smusma 🖖🏼 Довге життя Україна!
![[image]](https://static.bebac.at/pics/Blue_and_yellow_ribbon_UA.png)
Helmut Schütz
![[image]](https://static.bebac.at/img/CC by.png)
The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes
Complete thread:
- no of samples above ULOQ Ken Peh 2014-08-14 17:40
- no of samples above ULOQ ElMaestro 2014-08-14 19:28
- Pattern?Helmut 2014-08-15 04:16
- Pattern? Ken Peh 2014-08-17 20:31
- Not deserving an answer? Helmut 2014-08-17 21:27
- Combinatorics ElMaestro 2014-08-17 23:17
- Well done! Helmut 2014-08-17 23:43
- Pattern? ElMaestro 2014-08-18 23:54
- Few runs? Helmut 2014-08-19 03:04
- Few runs? ElMaestro 2014-08-19 23:32
- Few runs? ElMaestro 2014-08-20 00:07
- Hazelnut-sized brain Helmut 2014-08-20 11:27
- Few runs? ElMaestro 2014-08-20 00:07
- Few runs? ElMaestro 2014-08-19 23:32
- Few runs? Helmut 2014-08-19 03:04
- Pattern? Ken Peh 2014-08-17 20:31