phenotyping [Design Issues]
Dear Phani,
please search in the future.
No, it is not mandatory - but highly advisable. If you have the slightest hint of genetic polymorhism, do it. Remember, that in a parallel design the treatment effect is based on a between-subject comparison. What if you have by chance one slow metabolizer in one group of subjects and none in the other? The treatment effect will be biased.
I would not phenotype/genotype only if
Phenotyping, yes. Genotyping, no. The former needs administration of a model drug, collection of (24h-) urine, having a validated method, relying on an accepted metabolite/parent-ratio,… The latter is technically easier (collection of just one blood sample), but requires adherence to additional legal requirements in some countries.
For a CRO genotyping is the method of choice. From one blood sample the subject can be genotyped for all expressing alleles. In other words, you get information about all phenotypes - contrary to simple phenotyping (only one specific pathway).
BTW, see this bad case.
please search in the future.
❝ Is phenotyping/genotyping mandatory in a parallel design of study, this is stated in EMEA guidance.
No, it is not mandatory - but highly advisable. If you have the slightest hint of genetic polymorhism, do it. Remember, that in a parallel design the treatment effect is based on a between-subject comparison. What if you have by chance one slow metabolizer in one group of subjects and none in the other? The treatment effect will be biased.
I would not phenotype/genotype only if
- the drug is excreted unchanged, or
- you have - well documented - evidence that the metabolic pathway is not subjected to polymorphism.
❝ Isn't the procedure cumbersome?
Phenotyping, yes. Genotyping, no. The former needs administration of a model drug, collection of (24h-) urine, having a validated method, relying on an accepted metabolite/parent-ratio,… The latter is technically easier (collection of just one blood sample), but requires adherence to additional legal requirements in some countries.
For a CRO genotyping is the method of choice. From one blood sample the subject can be genotyped for all expressing alleles. In other words, you get information about all phenotypes - contrary to simple phenotyping (only one specific pathway).
BTW, see this bad case.
—
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Dif-tor heh smusma 🖖🏼 Довге життя Україна!
![[image]](https://static.bebac.at/pics/Blue_and_yellow_ribbon_UA.png)
Helmut Schütz
![[image]](https://static.bebac.at/img/CC by.png)
The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes
Complete thread:
- phenotyping Phaneendra.K 2011-03-10 12:42
- phenotypingHelmut 2011-03-10 13:15
