R1 vs R2 [RSABE / ABEL]
❝ To repeat my question: Which result do you trust?
❝
❝ What bothers me further is that a distinction of R into R1 and R2 is purely arbitrary. An ratio R vs. R different from 1 is horrible for me.
Yes, this is truly weird.
We are testing one and the same product against itself, so by definition we know that the true P/E is exactly 1 with 100% confidence. In practice we get some variability, though, if we try and verify it in practice. Biology sucks.
❝ Moreover the distinction of R into R1 and R2 and evaluation of the R data alone via ANOVA with effects tmt2, period, sequence and subject within sequence is not universally valid. Try it with the EMA dataset I, a 4 period full replicate study. I got:
❝ Source DF Type III SS Mean Square F Value Pr > F
❝
❝ sequence 0 0.0000000 . . .
❝ subject(sequence) 74 118.3549864 1.5993917 8.02 <.0001
❝ period 1 0.3995422 0.3995422 2.00 0.1612
❝ Trapped in the type III hell! No estimate of R1 vs R2 obtainable.
❝ It only functions if you omit period from the model.
Can you send me the dataset (coded R1 and R2) in an excel file or something like that? I need to look at the columns and rank of the design matrix to figure it out.
Muchas gracias.
Pass or fail!
ElMaestro
Complete thread:
- Ref. vs. Ref. in partial replicate design d_labes 2012-04-25 15:52
- Ref. vs. Ref. in partial replicate design again d_labes 2012-10-10 10:56
- Ref. vs. Ref. in partial replicate design ElMaestro 2012-10-10 12:39
- Ref. vs. Ref. in partial replicate design d_labes 2012-10-10 16:26
- Ref. vs. Ref. in partial replicate design ElMaestro 2012-10-10 17:16
- R vs. R in partial replicate design d_labes 2012-10-11 09:43
- R1 vs R2 ElMaestro 2012-10-11 10:26
- R1 vs R2 d_labes 2012-10-11 12:01
- R1 vs R2ElMaestro 2012-10-11 12:09
- R1 vs R2 d_labes 2012-10-11 12:46
- treatment df ElMaestro 2012-10-11 13:38
- Missunderstanding d_labes 2012-10-11 16:34
- Missunderstanding, crippled ElMaestro 2012-10-11 18:12
- EMA crippled method - R peculiarities d_labes 2012-10-12 14:54
- All is good, just forget ANOVA - you don't need it! ElMaestro 2012-10-12 16:25
- Just forget ANOVA. What next? d_labes 2012-10-15 08:35
- Just forget ANOVA. What next? ElMaestro 2012-10-15 10:04
- Just forget ANOVA. What next? d_labes 2012-10-15 08:35
- All is good, just forget ANOVA - you don't need it! ElMaestro 2012-10-12 16:25
- EMA crippled method - R peculiarities d_labes 2012-10-12 14:54
- Missunderstanding, crippled ElMaestro 2012-10-11 18:12
- Missunderstanding d_labes 2012-10-11 16:34
- treatment df ElMaestro 2012-10-11 13:38
- R1 vs R2 d_labes 2012-10-11 12:46
- R1 vs R2ElMaestro 2012-10-11 12:09
- R1 vs R2 d_labes 2012-10-11 12:01
- R1 vs R2 ElMaestro 2012-10-11 10:26
- R vs. R in partial replicate design d_labes 2012-10-11 09:43
- Ref. vs. Ref. in partial replicate design ElMaestro 2012-10-10 17:16
- Ref. vs. Ref. in partial replicate design d_labes 2012-10-10 16:26