R1 vs R2 [RSABE / ABEL]

posted by ElMaestro  – Denmark, 2012-10-11 14:09 (4598 d 10:03 ago) – Posting: # 9387
Views: 10,939

Dear d_labes,

❝ To repeat my question: Which result do you trust?


❝ What bothers me further is that a distinction of R into R1 and R2 is purely arbitrary. An ratio R vs. R different from 1 is horrible for me.


Yes, this is truly weird.
We are testing one and the same product against itself, so by definition we know that the true P/E is exactly 1 with 100% confidence. In practice we get some variability, though, if we try and verify it in practice. Biology sucks.

❝ Moreover the distinction of R into R1 and R2 and evaluation of the R data alone via ANOVA with effects tmt2, period, sequence and subject within sequence is not universally valid. Try it with the EMA dataset I, a 4 period full replicate study. I got:

  Source               DF    Type III SS    Mean Square   F Value   Pr > F


❝   tmt2                  0      0.0000000       .              .      .
❝   sequence              0      0.0000000       .              .      .
❝   subject(sequence)    74    118.3549864      1.5993917      8.02   <.0001
❝   period                1      0.3995422      0.3995422      2.00   0.1612

❝ Trapped in the type III hell! No estimate of R1 vs R2 obtainable.

❝ It only functions if you omit period from the model.


Can you send me the dataset (coded R1 and R2) in an excel file or something like that? I need to look at the columns and rank of the design matrix to figure it out.

Muchas gracias.

Pass or fail!
ElMaestro

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