Vd/F calculation in bear [🇷 for BE/BA]
Hi CECIF,
Exactly. The wonderful thing with open source is that you can perform a “whitebox” validation. With commercial software you can only perform a “blackbox” validation (rubbish in, rubbish out).
bear’s source code is available at
https://sourceforge.net/projects/yjlee-r-packages/files/bear/src/bear_2.8.3.tar.gz/download
Inspecting the script
and in line 520
Hope that helps.
PS: The same formula is used in Phoenix/WinNonlin.
PPS: IMHO, the “volume of distribution” after an extravascular dose (if no i.v. dose was administered in the same study) bears [pun!] limited – if any – meaning. Since F is unknown, what’s the purpose of reporting V/F?
❝ […] the one parameter I have been struggling to get right in any way was Vd/F. Therefore I really need to ask what method bear uses to calculate it. […]
❝ or is it simply Vd/F=D/(AUC0inf*Ke)?
Exactly. The wonderful thing with open source is that you can perform a “whitebox” validation. With commercial software you can only perform a “blackbox” validation (rubbish in, rubbish out).
bear’s source code is available at
https://sourceforge.net/projects/yjlee-r-packages/files/bear/src/bear_2.8.3.tar.gz/download
Inspecting the script
NCA.r
you find in line 284 VdFRef[j]<-Dose/(aucINF*ke)
and in line 520
VdFTest[j]<-Dose/(aucINF*ke1)
Hope that helps.
PS: The same formula is used in Phoenix/WinNonlin.
PPS: IMHO, the “volume of distribution” after an extravascular dose (if no i.v. dose was administered in the same study) bears [pun!] limited – if any – meaning. Since F is unknown, what’s the purpose of reporting V/F?
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Dif-tor heh smusma 🖖🏼 Довге життя Україна!
![[image]](https://static.bebac.at/pics/Blue_and_yellow_ribbon_UA.png)
Helmut Schütz
![[image]](https://static.bebac.at/img/CC by.png)
The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes
Complete thread:
- Vd/F calculation in bear CECIF 2017-11-02 22:45
- Vd/F calculation in bearHelmut 2017-11-02 23:46
- Vd/F calculation in bear yjlee168 2017-11-02 23:59
- Vd/F calculation in bear CECIF 2017-11-03 23:54