Bioequivalence and Bioavailability Forum • Preview of bear v2.5.4

Preview of bear v2.5.4 [🇷 for BE/BA]

posted by yjlee168 – Kaohsiung, Taiwan, 2013-03-20 11:53 (4473 d 06:42 ago) – Posting: # 10244
Views: 12,823

Dear all,

I plan to release bear v2.5.4 recently. One thing is that R v3.0 will be released on April 3, 2013. I am wondering if I should wait until R v3.0, although I have tested bear v2.5.4 with nightly built of R v3.0 pre-release or alpha. Anyway, before that, I would like to share change logs of bear v2.5.4 here.

grouping all output files for each run with random batch# and system date as leading characters for these output files; more output files will be generated from this version. and thus no more overwrite output files from previous runs now.
outlier detection analysis (ODA) is taken away from routine run; and also ODA outputs are separated (plots & text output files);
max. data point selections for lambda_z estimation was increased to 6 (2-6);
single plot (1x1) for point selection now (used to be 2x2 plots) with manual data point selection for lambda_z estimation;
fix inconsistent outputs for unbalanced dataset (between anova & stat summary output files);
incomplete dataset will be blocked before being analyzed (hopefully);
use "file.choose()" for data file selections; no more limit to working directory for data files anymore; however, all output files still go to working directory;
summary lambda_z selections outputs as .csv format of total subjects; this still not available for demo runs currently; also fixed the outputs in nca_output files for manual selection list;
pivotal and misc pk parameters output file as .csv format;
add "/extdata" directory to store demo data files as .rda format;
fixed error due to lineplot.ci() (from sciplot package) to successfully generate NCA plots with R 3.0 pre-release/alpha? (though it is be OK with R v2.15.3);
add "extdata" directory to store demo data files as .rda format; thus remove data() call for good practice (users won't feel this change at all).

I will update this change log later if necessary. User can install updated version with R console (menu-> Packages-> Update packages...) from CRAN mirror site after successful submission. Thank you for your interest in bear and have a nice day.

—
All the best,
-- Yung-jin Lee
bear v2.9.2:- created by Hsin-ya Lee & Yung-jin Lee
Kaohsiung, Taiwan https://www.pkpd168.com/bear
Download link (updated) -> here

Complete thread:

Preview of bear v2.5.4yjlee168 2013-03-20 10:53
- Pre-release of bear v2.5.4 yjlee168 2013-03-27 22:22
  - Release of bear v2.5.4 yjlee168 2013-04-04 13:48
    - error in file (file, "rt") bear v2.5.4 elba.romero 2013-04-13 23:47
      - error in file (file, "rt") bear v2.5.4 yjlee168 2013-04-14 00:25
        
        error in file (file, "rt") bear v2.5.4 elba.romero 2013-04-16 03:46
        
        error in file (file, "rt") bear v2.5.4 yjlee168 2013-04-16 08:32
        
        error in file (file, "rt") bear v2.5.4-traceback file elba.romero 2013-04-18 00:22
        
        Yes, it's a bug -> error in file (file, "rt") yjlee168 2013-04-18 10:30
        
        Yes, it's a bug -> error in file (file, "rt") elba.romero 2013-04-20 03:19