Mean concentration curves – which mean #666 [Software]
Dear Helmut,
If mean curves are not relevant (full ACK with this statement
) but only an illustration why should the type of mean matter? IMHO the arithmetic means (mostly much easier to obtain via built in functions, SAS f.i. doesn't have a function for the geomean) will do also.
Of course you are right from a 'theoretical' point of view. The geomean is more appropriate if one presumes a log-normal distribution for the concentrations. But an Austrian friend of mine is not totally convinced of that
.
What to do with values <LLOQ in calculating the geometric means? Setting to zero as usual would result in geomean=0 if any value at the considered time point is <LLOQ, according to the definition
But usually the geomean is calculated via logs. And if I remember a quite recent discussion correct WNL/Phoenix will produce silently missings, like my SAS beast also. That corresponds to "leave values <LLOQ out".
Only R which treats
Using the geomean may further require different strategies for handling <LLOQ values depending on the time point. We had a discussion about this here back in the year 2008.
❝ Yep. BTW, mean plots (I hope you are using geometric means) are not relevant in BE – they give just a first impression.
If mean curves are not relevant (full ACK with this statement

Of course you are right from a 'theoretical' point of view. The geomean is more appropriate if one presumes a log-normal distribution for the concentrations. But an Austrian friend of mine is not totally convinced of that

What to do with values <LLOQ in calculating the geometric means? Setting to zero as usual would result in geomean=0 if any value at the considered time point is <LLOQ, according to the definition
geomean=n-th root of the product of the values
But usually the geomean is calculated via logs. And if I remember a quite recent discussion correct WNL/Phoenix will produce silently missings, like my SAS beast also. That corresponds to "leave values <LLOQ out".
Only R which treats
log(0) = -Inf
comes natively out with geomean=0 if calculated via mean of logs and then back-transformed.Using the geomean may further require different strategies for handling <LLOQ values depending on the time point. We had a discussion about this here back in the year 2008.
—
Regards,
Detlew
Regards,
Detlew
Complete thread:
- WNL, time deviations Beholder 2014-03-25 06:23
- Use nominal times fno 2014-03-25 09:47
- Use nominal times Beholder 2014-03-27 07:50
- Data binning Helmut 2014-03-27 13:47
- Data binning Beholder 2014-03-28 08:08
- Mean concentration curves – which mean #666d_labes 2014-03-28 11:30
- Data binning Helmut 2014-03-27 13:47
- Use nominal times AngusMcLean 2014-03-29 13:06
- Use nominal times mittyri 2014-03-29 14:45
- Use nominal times mittyri 2014-03-31 20:31
- Use nominal times fno 2014-04-01 17:48
- Use nominal times Beholder 2014-04-02 08:23
- Use nominal times fno 2014-04-02 17:16
- SOPitis? Helmut 2014-04-02 11:57
- SOPitis? fno 2014-04-04 09:49
- Use nominal times Beholder 2014-04-02 08:23
- Use nominal times fno 2014-04-01 17:48
- Use nominal times Beholder 2014-03-27 07:50
- WNL, time deviations SDavis 2014-04-24 15:10
- Use nominal times fno 2014-03-25 09:47