Avoid Excel! [Power / Sample Size]
Hi Aflores,
Avoid Excel! BTW, you are not interested in the standard normal distribution – the function you are looking for is
I recommend to use the freeware R / package
If you are interested in setting up your own simulations (let’s say the T/R-ratio, target power, or acceptance range are not covered in one of the publications) maybe you are interested in this thread. Note that the convergence of empiric α (i.e., simulating at T/R 1.25) is slow. You need 106 simulations to get a stable estimate. Sim’s of empiric power (i.e., simulating at the expected T/R) converge faster; 105 sim’s are sufficient. Results obtained by
In simulations with
Good luck and happy coding!
❝ I'm working on an Excel project that would calculate Power for a sequential BE, based on the journal from Potvin, et al. […] the =NORMSDIST(x) function seemed to be incorrect for this purpose.
Avoid Excel! BTW, you are not interested in the standard normal distribution – the function you are looking for is
TINV(p, df). Potvin et al. claim in their paper to have used the method of Hauschke et al. (1992).1 Note that this is only- an approximation (by the shifted central t-distribution)
- of an approximation (by the noncentral t-distribution)
- of the exact method (Owen’s Q-function).
method % power
───────────────────────────
shifted central t 50.49
noncentral t 52.16
exact 52.51
───────────────────────────I recommend to use the freeware R / package
PowerTOST … instead of recreating the wheel in a lousy software.If you are interested in setting up your own simulations (let’s say the T/R-ratio, target power, or acceptance range are not covered in one of the publications) maybe you are interested in this thread. Note that the convergence of empiric α (i.e., simulating at T/R 1.25) is slow. You need 106 simulations to get a stable estimate. Sim’s of empiric power (i.e., simulating at the expected T/R) converge faster; 105 sim’s are sufficient. Results obtained by
Power2Stage / function Power.2stage generally agree2 with results reported by Potvin et al. (the few differences might be due to different seeds of the pseudo-random number generator).n1 CV% a b c n1 CV% a b c
─────────────────────────────────────────────────────────────
12 10 0.0297 0.0294 0.0294 12 60 0.0297 0.0299 0.0299
24 10 0.0294 0.0292 0.0292 24 60 0.0307 0.0308 0.0309
36 10 0.0294 0.0293 0.0293 36 60 0.0333 0.0332 0.0332
48 10 0.0292 0.0293 0.0293 48 60 0.0399 0.0399 0.0399
60 10 0.0292 0.0293 0.0293 60 60 0.0466 0.0466 0.0466
–––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
12 20 0.0463 0.0463 0.0463 12 70 0.0294 0.0293 0.0293
24 20 0.0320 0.0315 0.0315 24 70 0.0299 0.0305 0.0305
36 20 0.0294 0.0294 0.0294 36 70 0.0306 0.0305 0.0305
48 20 0.0292 0.0293 0.0293 48 70 0.0328 0.0325 0.0325
60 20 0.0297 0.0293 0.0293 60 70 0.0381 0.0379 0.0378
–––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
12 30 0.0437 0.0438 0.0437 12 80 0.0292 0.0293 0.0293
24 30 0.0475 0.0473 0.0475 24 80 0.0298 0.0300 0.0300
36 30 0.0397 0.0396 0.0396 36 80 0.0303 0.0300 0.0300
48 30 0.0324 0.0320 0.0321 48 80 0.0303 0.0300 0.0300
60 40 0.0296 0.0295 0.0295 60 80 0.0318 0.0319 0.0318
–––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
12 40 0.0344 0.0345 0.0342 12 90 0.0289 0.0291 0.0291
24 40 0.0433 0.0433 0.0431 24 90 0.0298 0.0301 0.0301
36 40 0.0485 0.0484 0.0486 36 90 0.0296 0.0298 0.0298
48 40 0.0458 0.0454 0.0456 48 90 0.0297 0.0299 0.0299
60 40 0.0409 0.0405 0.0406 60 90 0.0300 0.0302 0.0302
–––––––––––––––––––––––––––––––––––––––––––––––––––––––––––––
12 50 0.0309 0.0310 0.0311 12 100 0.0291 0.0290 0.0289
24 50 0.0338 0.0336 0.0336 24 100 0.0298 0.0299 0.0299
36 50 0.0420 0.0418 0.0418 36 100 0.0298 0.0297 0.0297
48 50 0.0484 0.0481 0.0483 48 100 0.0297 0.0297 0.0297
60 50 0.0483 0.0478 0.0478 60 100 0.0301 0.0296 0.0296
─────────────────────────────────────────────────────────────In simulations with
Power.2stage I suggest method="nct". Results are pretty close to the exact ones, but the code runs much faster. On the other hand the boost in speed by method="shifted" is negligible. The gain in accuracy by method="exact" is not worth the efforts. Comparison on my machine of “Method B”, n1 12, CV 20%; 106 sim’s each:
Method alpha runtime (min)
────────────────────────────────
shifted 0.046343 1.35
nct 0.046262 1.50
exact 0.046053 15.00
────────────────────────────────Good luck and happy coding!
- Hauschke D, Steinijans VW, Diletti E, Burke M. Sample Size Determination for Bioequivalence Assessment Using a Multiplicative Model. J Pharmacokin Biopharm. 1992;20(5):557–61.
- Empiric type I error for “Method B”, 106 sim’s each. Results obtained by
Power2Stage(functionPower.2stage) which are outside the 95% confidence interval of Potvin’s results (i.e., are significantly different) are formatted in red.
a: Potvin et al.
b:Power2Stagev0.1-1; noncentral t
c:Power2Stagev0.1-2 (experimental – not on CRAN yet); shifted t
To calculate the 95% CI of a given value use this code (example 0.0297):
x <- 0.0297
cat(x, as.numeric(binom.test(x*1e6, 1e6, alternative='two.sided')$conf.int), "\n")
which gives:
0.0297 0.02936814 0.03003459
—
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Dif-tor heh smusma 🖖🏼 Довге життя Україна!
![[image]](https://static.bebac.at/pics/Blue_and_yellow_ribbon_UA.png)
Helmut Schütz
![[image]](https://static.bebac.at/img/CC by.png)
The quality of responses received is directly proportional to the quality of the question asked. 🚮
Science Quotes
Complete thread:
- Sequential Design CDF APFlores 2014-06-23 08:14
- Avoid Excel!Helmut 2014-06-23 14:08
- Avoid Excel! APFlores 2014-06-24 04:40
- Sequential Design CDF ElMaestro 2014-06-24 09:59
- Sequential Design CDF APFlores 2014-06-25 03:03
- R is not that complicated… Helmut 2014-06-25 13:58
- R is not that complicated… APFlores 2014-06-26 08:38
- no need Winzip to install any R package yjlee168 2014-06-26 10:36
- no need Winzip to install any R package APFlores 2014-06-27 08:58
- no need Winzip to install any R package yjlee168 2014-06-26 10:36
- R is not that complicated… APFlores 2014-06-26 08:38
- R is not that complicated… Helmut 2014-06-25 13:58
- Sequential Design CDF APFlores 2014-06-25 03:03
- Avoid Excel!Helmut 2014-06-23 14:08
